AMRIS
Advanced Magnetic Resonance Imaging and
Spectroscopy
Facility
AMRIS Rules and Policy
The Advanced Magnetic Resonance Imaging and Spectroscopy (AMRIS) facility is a fee-for-service auxiliary of the McKnight Brain Institute
(MBI) of the University of Florida. The AMRIS facility has state-of-the-art
NMR instrumentation for solution state biomolecular NMR, solid-state biological NMR, microimaging, small animal imaging, large
animal imaging, human brain imaging, and human whole-body imaging. Detailed protocols for human imaging systems can be found here. With the support of a P41
Resource Grant (Dr. Stephen Blackband, PI) from the NIH/NCRR
and an NSF grant to the National High Magnetic Field Laboratory (NHMFL), AMRIS also
provides a radio frequency (rf)
lab for developing unique coils and capabilities for use with the magnets.
Click here for a complete list of available instrumentation.
AMRIS Tours:
Only authorized users who have completed the safety course
are allowed in the AMRIS facility. The human imaging systems have additional safety requirements.
However, AMRIS staff members are available to provide guided tours for small groups of people who are interested in seeing the facility.
For personal safety, people with heart pace makers or other
surgically implanted metal devices will not be allowed to participate in
tours. Please contact the Coordinator to arrange a tour.
AMRIS Facility Access:
AMRIS is supported by user fees, the MBI, and the National High Magnetic
Field Laboratory (NHMFL). The facilities are available to all qualified
researchers from UF, other universities, and industry. Commercial clients are welcome to use the facility but the rates charged are
higher. Please contact the AMRIS Director for details. Academic users have scheduling priority over
commercial users.
All users must attend a 1 hour AMRIS safety course and
pass a short written examination before using the facilities.
All users must provide the AMRIS Office Administrator a valid encumbrance number with which to pay
the user fee before using the facilities.
Several mechanisms are available for using the facilities.
- Instrument Operation by Experienced Users: Any experienced user who can demonstrate the ability to safely and
properly operate the systems can independently operate most of the AMRIS
instrumentation. This is the least expensive method to use the AMRIS
facility. Details for approval vary with each system and are described under the particular
instrument. Please contact the appropriate AMRIS application scientists
for approval to use the facilities as an independent operator.
- Data Collection by AMRIS Staff: With the exception of the 3T human
systems, users will be charged for the total instrument fees plus an hourly consulting fee for this
service. The staff scientist should be included as a co-author on publications
resulting from the work,
especially for extended studies involving considerable amount of AMRIS staff involvement (time and effort). Please contact the
appropriate AMRIS application scientist or the AMRIS Director for
details.
- Data Collection and Analysis by AMRIS Staff: In a limited number of cases, data can be collected and analyzed by AMRIS staff
for the full hourly consulting fee plus the hourly cost of NMR instruments. Due to a limited number of staff members, we discourage
this choice and would prefer instead to help train a student to do the analysis. This is the most expensive method for using the AMRIS
facility. In addition to full instrument time and consulting fees, AMRIS staff members involved at this level must be included as
co-authors or primary authors of resulting publications.
- NMR Imaging and Spectroscopy Classes: The Departments of Biochemistry & Molecular
Biology and Neuroscience offer
annual NMR and MRI lecture and laboratory graduate level classes; these
classes provide the theory and practical application of NMR and MRI.
Contact Dr. Edison
for further details.
- Users Individually Trained by AMRIS Staff: The
training can be tailored to meet individual needs. In addition to the
instrument time, an hourly consulting fee will be charged for this service
. Please contact the appropriate
AMRIS application scientist for training.
AMRIS Safety Policy:
Magnets in any NMR facility can be dangerous if not properly used, and AMRIS has some of the
largest magnets in the world. All AMRIS users and regular guests and visitors are required to attend and complete a 1 hour safety
training
session before getting access to the facility. Class size is limited to 20 people, and we will offer these as often as needed.
Please
contact Gary Blaskowski for reservations.
We encourage you to also read the AMRIS Safety Document.
A summary of the safety issues follows:
The magnets in the AMRIS facility are always turned on. This poses
several SERIOUS DANGERS:
- Metallic objects should never be brought around the magnets. They
can become flying projectiles and can severely damage the magnet and
injure or kill a person.
- Heart pacemakers will stop functioning and surgically implanted
metallic devices can be dislodged around the magnets.
- Magnets occasionally quench. A magnet quench is the rapid loss of liquid nitrogen and liquid helium into the room. People can
die of asphyxiation, by freezing, or both if proper precautions are not taken during a magnet quench. In the event of a quench in the
AMRIS facility, it is important to leave immediately.
It is the responsibility of users to learn and follow safety guidelines.
Serious or repeated violations of AMRIS safety policies will result in
loss of access to the facility.
AMRIS Visitors:
NMR facilities may be dangerous places for visitors. Untrained visitors and guests may be at great risk of personal injury and may
provide significant dangers to other users.
Unauthorized visitors who are not part of a guided tour by AMRIS
staff are not allowed into the AMRIS facility. Users are not allowed to
give tours of the facility.
Most importantly, AMRIS users are not allowed to bring guests into the
facility without first contacting any AMRIS staff member. A
"guest" is any person who is not an authorized AMRIS user (even scientific
collaborators or assistants). Guests will be granted facility access
according to the following guidelines:
- If the guest will need to enter the facility more than once, he or
she will need to first take the 1 hour AMRIS safety class.
- For a single visit, a guest must be approved and registered with AMRIS staff,
supervised at all times by the authorized user and not
allowed to visit other magnets. Staff members will be able to provide
tours, if desired.
- Guests are not allowed in the dangerous "red" zones painted on the
floors around each magnet.
It is the responsibility of the users to follow or guest policy.
Violations of any of these rules may result in the loss of AMRIS
privileges by the user.
Payment for Services:
Payment for AMRIS services must be arranged before using the
facility by
contacting the AMRIS Office Administrator. There are 3 ways to
pay AMRIS fees:
- Directly from a federal, state, local, or private research grant.
This is the preferred and primary method for most users. It is the
responsibility of users to include all necessary instrument and consulting
fees in the budgets of grants which will utilize the AMRIS facility. The
AMRIS Director or application scientists are available to
help estimate instrument time and cost requirements.
- Qualified researchers who are not at the University of
Florida,
Florida State University or Los Alamos National Laboratory are invited to
submit short (less than 2 page) proposals for AMRIS instrument time and,
in some cases, staff consulting time. This external user program is
funded by the National Science Foundation (NSF) through the National High
Magnetic Field Laboratory (NHMFL). Outside users who collaborate on
projects with faculty at UF, FSU, or LANL also qualify for these funds.
To maximize this important source of funds, we will limit the funding to 2
years. All researchers who use NHMFL funds are expected to secure
external independent funding for the project no more than 2 years
following the start of the NHMFL support. For further details, please
contact the AMRIS Director.
Time Requests:
Time Requests:
- Advanced reservation requests are made monthly and are due on the 15th of the month for the
following month using the request form found on each systems web page.
- Requests made more than month in advance will only be considered in special circumstances such as a long-term time-course study or to accomodate a visiting collaborators travel plans.
Lab
Courtesy
Users are responsibility for cleaning up trash, samples, and personal items before leaving the facility. All users are
expected to follow proper chemical and biological hygiene protocols. Cleanup time must be included in the requested instrument time, and
the instrument must be clean and ready to use by the end of a user's scheduled time.
Users must start and stop their experiments on time. If an experiment exceeds the scheduled time, we may be forced to stop the experiment.
Billing Policy:
Users will be billed for the time scheduled or
the time actually used,
whichever is larger.
Users will be billed for unused time if it is not
cancelled 48 hours in advance or if the user does not find another
authorized user who will use the time.
Data Storage, Processing, and Analysis:
NMR and MRI data sets can be very large. The computers running the
AMRIS spectrometers are only for data collection and not data storage or
analysis. CDROM devices are available on each spectrometer to archive
data. Data may
also be transferred to other computers via ftp.
Users are responsible for their own data, and all data must be removed
from the NMR computers within 4 weeks of collection.
Data older than 4 weeks can be deleted at the discretion of AMRIS staff
without notification to the owner of the data.
All human research on AMRIS instrumentation must comply with HIPAA regulations. Data handling protocols on the 3T instruments have been
implemented according to these regulations (University of Florida Privacy Office).
AMRIS Facility Acknowledgements:
All publications that include data from the AMRIS facility should state:
"NMR (MRI) data were obtained at the Advanced Magnetic Resonance Imaging
and Spectroscopy (AMRIS) facility in the McKnight Brain Institute of the
University of Florida."
All publications resulting from NHMFL support should state:
"NMR (MRI) data were supported through the National High Magnetic Field
Laboratory and obtained at the Advanced Magnetic Resonance Imaging and
Spectroscopy (AMRIS) facility in the McKnight Brain Institute of the
University of Florida."
Please send the AMRIS Director references of all publications using
the facility. We would also appreciate a report of awards, grants, and other honors related to the facility that you receive.
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